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visitnoSeqs/Sample PD_whole_tree Ave.PD_whole_tree Err. chao1 Ave.chao1 Err. observed_species Ave.observed_species Err.
1200.0 4.761 1.944 48.022 28.389 30.545 16.579
1360.0 5.447 2.172 58.229 33.482 38.764 21.341
1520.0 5.889 2.315 65.411 37.498 44.459 24.600
1680.0 6.221 2.421 70.739 40.592 48.918 27.165
1840.0 6.492 2.504 75.469 43.345 52.615 29.252
11000.0 6.715 2.570 79.398 46.742 55.792 31.046
2200.0 4.815 1.944 49.349 29.939 31.013 16.716
2360.0 5.512 2.184 60.097 35.284 39.423 21.598
2520.0 5.975 2.340 67.786 39.700 45.347 25.047
2680.0 6.318 2.453 73.564 43.011 49.937 27.770
2840.0 6.601 2.541 78.151 46.003 53.791 29.953
21000.0 6.833 2.620 81.704 49.069 57.053 31.881
3200.0 5.274 1.424 58.661 20.357 35.930 13.006
3360.0 6.114 1.482 70.527 24.969 45.691 15.918
3520.0 6.677 1.490 78.110 27.251 52.952 18.027
3680.0 7.056 1.502 86.156 31.669 58.404 19.509
3840.0 7.368 1.560 90.845 32.593 62.948 21.054
31000.0 7.625 1.577 93.949 36.709 66.826 22.372
HMPbodysubsiteSeqs/Sample PD_whole_tree Ave.PD_whole_tree Err. chao1 Ave.chao1 Err. observed_species Ave.observed_species Err.
Anterior_nares200.0 3.451 1.117 32.764 16.563 19.462 7.951
Anterior_nares360.0 4.107 1.340 43.632 21.723 25.160 10.831
Anterior_nares520.0 4.565 1.468 51.133 24.861 29.455 12.929
Anterior_nares680.0 4.909 1.572 56.601 27.116 32.983 14.670
Anterior_nares840.0 5.210 1.662 61.323 29.996 36.135 16.130
Anterior_nares1000.0 5.459 1.736 64.874 34.253 38.853 17.402
Attached_Keratinized_gingiva200.0 3.442 0.995 27.022 12.069 18.789 7.478
Attached_Keratinized_gingiva360.0 3.841 1.088 32.896 14.311 23.048 9.272
Attached_Keratinized_gingiva520.0 4.109 1.157 37.022 16.369 25.963 10.609
Attached_Keratinized_gingiva680.0 4.309 1.191 40.332 17.965 28.290 11.522
Attached_Keratinized_gingiva840.0 4.476 1.234 43.281 19.644 30.272 12.340
Attached_Keratinized_gingiva1000.0 4.614 1.267 45.469 22.561 31.987 13.017
Buccal_mucosa200.0 4.604 1.065 47.529 17.249 28.690 9.526
Buccal_mucosa360.0 5.334 1.213 59.117 20.159 37.294 12.361
Buccal_mucosa520.0 5.794 1.301 67.018 23.297 43.446 14.322
Buccal_mucosa680.0 6.137 1.386 72.018 25.037 48.241 15.928
Buccal_mucosa840.0 6.425 1.455 76.430 26.854 52.232 17.208
Buccal_mucosa1000.0 6.659 1.524 80.572 30.492 55.638 18.358
Hard_palate200.0 5.533 0.888 53.266 14.843 34.045 7.901
Hard_palate360.0 6.282 1.002 62.894 17.240 42.963 10.111
Hard_palate520.0 6.770 1.081 70.725 19.651 49.335 11.830
Hard_palate680.0 7.133 1.148 76.143 21.529 54.104 13.137
Hard_palate840.0 7.406 1.200 80.860 24.213 58.010 14.311
Hard_palate1000.0 7.642 1.249 84.734 26.972 61.364 15.260
Left_Antecubital_fossa200.0 5.710 1.990 74.613 42.334 38.663 18.677
Left_Antecubital_fossa360.0 6.872 2.395 88.823 52.408 51.987 25.440
Left_Antecubital_fossa520.0 7.627 2.688 100.254 60.205 61.957 31.095
Left_Antecubital_fossa680.0 8.198 2.936 107.713 67.292 69.633 35.643
Left_Antecubital_fossa840.0 8.632 3.128 113.612 70.830 75.890 39.401
Left_Antecubital_fossa1000.0 8.980 3.307 117.325 73.706 81.130 42.985
Left_Retroauricular_crease200.0 2.586 1.231 23.905 19.767 12.885 8.466
Left_Retroauricular_crease360.0 3.149 1.471 32.120 24.025 17.199 11.549
Left_Retroauricular_crease520.0 3.564 1.649 39.079 29.355 20.624 13.992
Left_Retroauricular_crease680.0 3.897 1.777 44.249 32.173 23.537 15.962
Left_Retroauricular_crease840.0 4.175 1.882 48.403 35.346 26.049 17.632
Left_Retroauricular_crease1000.0 4.413 1.965 52.107 39.438 28.324 19.073
Mid_vagina200.0 2.042 1.130 12.300 10.885 7.899 5.218
Mid_vagina360.0 2.466 1.315 17.824 16.470 10.541 7.173
Mid_vagina520.0 2.724 1.450 21.036 18.070 12.472 8.626
Mid_vagina680.0 2.952 1.532 24.040 21.555 14.118 9.949
Mid_vagina840.0 3.142 1.606 26.516 23.273 15.550 11.036
Mid_vagina1000.0 3.307 1.670 27.770 24.647 16.881 12.189
Palatine_Tonsils200.0 6.209 0.992 57.092 15.596 38.355 8.655
Palatine_Tonsils360.0 6.955 1.151 68.115 18.472 47.632 11.204
Palatine_Tonsils520.0 7.442 1.247 74.933 20.513 54.060 12.979
Palatine_Tonsils680.0 7.791 1.330 80.841 22.181 58.894 14.436
Palatine_Tonsils840.0 8.059 1.389 85.630 24.630 62.907 15.583
Palatine_Tonsils1000.0 8.282 1.454 89.495 27.344 66.308 16.682
Posterior_fornix200.0 1.444 0.866 7.213 5.373 5.362 3.549
Posterior_fornix360.0 1.702 0.967 9.631 6.916 6.828 4.324
Posterior_fornix520.0 1.855 1.040 11.321 8.179 7.808 4.882
Posterior_fornix680.0 2.007 1.097 12.703 8.812 8.667 5.335
Posterior_fornix840.0 2.144 1.154 14.034 9.974 9.480 5.761
Posterior_fornix1000.0 2.264 1.207 15.020 10.876 10.181 6.171
Right_Antecubital_fossa200.0 5.435 1.879 69.213 39.739 35.440 16.347
Right_Antecubital_fossa360.0 6.522 2.209 84.877 47.070 47.913 22.672
Right_Antecubital_fossa520.0 7.232 2.437 93.533 54.703 56.693 27.081
Right_Antecubital_fossa680.0 7.758 2.620 100.949 58.497 63.633 30.733
Right_Antecubital_fossa840.0 8.181 2.788 107.622 62.989 69.418 34.004
Right_Antecubital_fossa1000.0 8.523 2.929 112.954 67.145 74.388 36.881
Right_Retroauricular_crease200.0 2.587 1.226 22.435 18.323 12.866 8.048
Right_Retroauricular_crease360.0 3.124 1.474 30.547 24.123 17.029 10.897
Right_Retroauricular_crease520.0 3.517 1.645 36.147 28.066 20.237 13.039
Right_Retroauricular_crease680.0 3.811 1.769 40.012 30.160 22.768 14.770
Right_Retroauricular_crease840.0 4.066 1.887 44.181 33.807 25.090 16.403
Right_Retroauricular_crease1000.0 4.285 1.970 46.995 36.007 27.141 17.738
Saliva200.0 6.963 0.891 77.949 17.760 48.980 9.012
Saliva360.0 7.925 1.077 92.595 20.786 62.626 12.174
Saliva520.0 8.542 1.197 102.385 23.526 71.898 14.488
Saliva680.0 8.967 1.293 109.622 26.100 78.942 16.295
Saliva840.0 9.331 1.379 116.214 28.924 84.760 17.802
Saliva1000.0 9.614 1.443 120.362 31.994 89.535 19.053
Stool200.0 5.183 1.267 83.647 31.712 45.998 14.920
Stool360.0 6.145 1.560 104.357 38.346 61.123 20.587
Stool520.0 6.809 1.769 120.269 44.644 72.281 24.804
Stool680.0 7.317 1.922 132.857 49.450 81.308 28.278
Stool840.0 7.744 2.039 143.146 52.982 88.945 31.044
Stool1000.0 8.112 2.150 152.476 58.847 95.740 33.651
Subgingival_plaque200.0 6.754 1.215 72.472 18.513 48.872 11.008
Subgingival_plaque360.0 7.571 1.389 84.736 21.773 61.287 14.592
Subgingival_plaque520.0 8.050 1.481 91.762 22.604 69.220 16.774
Subgingival_plaque680.0 8.403 1.555 97.364 24.022 75.134 18.498
Subgingival_plaque840.0 8.671 1.603 101.809 25.572 79.798 19.689
Subgingival_plaque1000.0 8.888 1.639 105.388 27.258 83.610 20.668
Supragingival_plaque200.0 5.707 1.277 62.225 19.754 43.333 11.927
Supragingival_plaque360.0 6.362 1.443 72.204 21.741 53.437 15.513
Supragingival_plaque520.0 6.766 1.545 78.944 24.062 59.876 17.594
Supragingival_plaque680.0 7.071 1.631 84.363 26.055 64.887 19.299
Supragingival_plaque840.0 7.324 1.699 87.688 27.451 68.780 20.591
Supragingival_plaque1000.0 7.515 1.745 90.884 29.765 72.010 21.650
Throat200.0 6.098 0.924 55.064 15.575 37.404 8.309
Throat360.0 6.857 1.069 65.256 17.509 46.271 10.734
Throat520.0 7.350 1.151 74.133 20.965 52.399 12.463
Throat680.0 7.705 1.249 79.428 22.659 57.078 13.967
Throat840.0 7.996 1.305 84.246 24.740 60.955 15.140
Throat1000.0 8.240 1.369 88.657 28.309 64.317 16.199
Tongue_dorsum200.0 5.465 0.744 41.765 10.512 30.090 5.885
Tongue_dorsum360.0 6.046 0.833 49.098 12.083 36.281 7.342
Tongue_dorsum520.0 6.395 0.874 54.195 13.815 40.318 8.243
Tongue_dorsum680.0 6.646 0.921 58.521 16.003 43.447 9.096
Tongue_dorsum840.0 6.846 0.950 61.824 17.798 46.075 9.753
Tongue_dorsum1000.0 7.004 0.980 64.509 20.704 48.237 10.412
Vaginal_introitus200.0 2.635 1.237 17.521 10.757 11.002 6.536
Vaginal_introitus360.0 3.081 1.344 23.523 14.198 14.253 8.104
Vaginal_introitus520.0 3.387 1.443 28.224 17.169 16.654 9.206
Vaginal_introitus680.0 3.626 1.507 31.452 19.224 18.675 10.200
Vaginal_introitus840.0 3.843 1.568 35.314 21.950 20.590 11.138
Vaginal_introitus1000.0 4.002 1.620 37.494 24.652 22.154 11.879
sexSeqs/Sample PD_whole_tree Ave.PD_whole_tree Err. chao1 Ave.chao1 Err. observed_species Ave.observed_species Err.
female200.0 4.449 2.069 44.066 30.188 28.032 17.498
female360.0 5.103 2.318 53.838 36.086 35.568 22.526
female520.0 5.524 2.483 60.704 40.346 40.841 26.011
female680.0 5.844 2.606 65.743 43.727 44.957 28.784
female840.0 6.108 2.697 70.393 46.529 48.412 30.990
female1000.0 6.324 2.776 74.180 50.003 51.360 32.928
male200.0 5.071 1.779 52.493 27.413 33.084 15.476
male360.0 5.795 1.992 63.500 31.906 42.042 19.983
male520.0 6.272 2.119 71.342 35.979 48.286 23.122
male680.0 6.622 2.211 77.287 38.954 53.145 25.570
male840.0 6.909 2.290 81.975 41.888 57.176 27.589
male1000.0 7.146 2.352 85.727 44.987 60.619 29.330